Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015809857.1_cds_XP_016495953.1_10228
CDS Infomation

[gene=LOC107814965] [db_xref=GeneID:107814965] [protein=pentatricopeptide repeat-containing protein At5g56310-like] [protein_id=XP_016495953.1] [location=join(49611..51422,51539..51661)] [gbkey=CDS]
Sequence

ATGTTGAAAATCCTCTTGCAACCATTGTACCAAAACTCATTTCCGCCCTCTTCTTACGCA
CCTATTTTCCAGTACTTGATTGGCAAGAATTTCCTCAAACTTGGCCAACAAGTTCACGCT
CACTTGGCCGTTCGAGGGATTTATCCCAATGGATTAGTCGCAGCGAAAATGGTCGCTATG
TATGCCAGCTCCGGTGAAATCGACTCCGCCTCACATATTTTCGATAATGCCACTGAACCC
TCTTCGCTTCTGTATAATGCCATGATTCGAGCACTTACCCTTTATGGGATTACTGATAGA
ACAATACAGCTTTACTTCCAAATGCATTCTTTGGGTTTGCGTGGTGACAATTTTACTTAT
CCTTTTGTGTTCAAGTCATGTGCCGACTTGTGTGATATTTGGTTGGGGAAATGTGTTCAT
GGCTCAATATTGAGATGTGGGTTGGTGTTTGATATCTATGTAGGCACTTCTTTGATTGAT
ATGTACGTTAAGTGTGGTGATTTGATTGAGGCTCGCAAACAGTTTGATGAAATGCCCGTG
AGAGATGTGTCGTCTTGGAATGCATTAATTGCTGGGTATATGAAGGATGGGTTATTCAAA
TACGCTGAGGAGTTGTTTGAGAAAATGCCAACTCGGAATATAGTGTCGTGGACAGCAATG
ATTTCTGGATATGCTCAGAATGGTTTAGCTGATAAGTCGTTGCGATTGTTTGATAAGATG
TTGGATCGTGACTCGGAGGTGAGGCCTAATTGGGTGACGATTATGAGTGTCTTACCTGCA
TGTGCGCACTCTGCTGAACTAGAACGTGGGAGGAAGATACATAGTTTTGCTAGAGAGACC
GGATTGGAGAAGAATCCTTCGGTGCAAACAGCTCTTATAGCCATGTATGCGAAATGTGGC
AGTCTGGTTGATGCTCGTTTGTGTTTCGATCAGATGAACCCGAAGGAGAAGAAGTTGGTT
GCTTGGAATACAATGGTTACTGCTTACGCATCCCATGGTTGTGGGCAGGAAGCTGTTTCA
ACGTTTGAGGATATGATACGAGCTGGTGTACAGCCTGATGGGATTACATTTACAGGCTTG
TTATCAGGTTGCAGCCACTCGGGTCTTGTGGATGTTGGACTAAGATATTTTGATTGTATG
AGTTCCGTTTACTTTGTGGAGCCGGGACACGATCATTATGCTTGTGTGGTTGATCTACTT
GGTCGTGCTGGACGATTGGTGGATGCATATAACCTCATTTCTCAAATGCCAATGGCAGCA
GGACCAAGCATTTGGGGTTCGTTATTAGCTGCTGGTCGAAGCCATCGCAACTTAGAAATT
GCAGAATTAGCAGCTAAAAAGTTATTTATCTTGGAACCAGACAACAGTGGGAATTATGTG
GTGCTCTCAAATATGTATGCAGAAGCTGGGATGTGGGAGGAAGTGAACTACTTGAGGATC
CAACTGAAATCACAACGTATTATGAAGAATCCTGGATGTAGTTGGATTGAATTTGAAGGA
AAGGCCCATTTATTCCTTGGAGGAGATACATCTCATCCACAGGCAGAACAAATATACATG
TTTTTAGAGGCACTGCCTGCCAAGATAAGAGCGGCTGGTTACATTCCAGATACTACTTTT
GCTTTGCATGATGTGAGTGAAGAGGAGAAAGAGCAAAATCTGAGTAGTCACAGTGAGAGG
CTGGCCATTGCCTTTGGCATTCTTAATACAAGCCCAGATACAGTTCTCCGAGTGACAAAG
AATCTTAGAATCTGTGGAGACTGTCATACTGTTATAAAACTTATCTCGAAAATATATGAA
AGAGAGATCATTCGTCAAGATCAATTAACAAACTCTGTTCGGGAATTCCTGAAGTTGCTA
TGCATGACCATGTCCAAGACTACCAGCTGTAAGATCTACCTTGTTAACTGTCCAGGCTTG
GGTGGAAATGATTAA

Peptide Sequence

PEP ID

XP_016495953.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Nicotiana tabacum]
Sequence

MLKILLQPLYQNSFPPSSYAPIFQYLIGKNFLKLGQQVHAHLAVRGIYPNGLVAAKMVAM
YASSGEIDSASHIFDNATEPSSLLYNAMIRALTLYGITDRTIQLYFQMHSLGLRGDNFTY
PFVFKSCADLCDIWLGKCVHGSILRCGLVFDIYVGTSLIDMYVKCGDLIEARKQFDEMPV
RDVSSWNALIAGYMKDGLFKYAEELFEKMPTRNIVSWTAMISGYAQNGLADKSLRLFDKM
LDRDSEVRPNWVTIMSVLPACAHSAELERGRKIHSFARETGLEKNPSVQTALIAMYAKCG
SLVDARLCFDQMNPKEKKLVAWNTMVTAYASHGCGQEAVSTFEDMIRAGVQPDGITFTGL
LSGCSHSGLVDVGLRYFDCMSSVYFVEPGHDHYACVVDLLGRAGRLVDAYNLISQMPMAA
GPSIWGSLLAAGRSHRNLEIAELAAKKLFILEPDNSGNYVVLSNMYAEAGMWEEVNYLRI
QLKSQRIMKNPGCSWIEFEGKAHLFLGGDTSHPQAEQIYMFLEALPAKIRAAGYIPDTTF
ALHDVSEEEKEQNLSSHSERLAIAFGILNTSPDTVLRVTKNLRICGDCHTVIKLISKIYE
REIIRQDQLTNSVREFLKLLCMTMSKTTSCKIYLVNCPGLGGND

Transcript Sequence

Gene sequence data has not been registered.